To pay a superannuation fund, from the main screen, click on the 'Super Mgr' picture button, select the fund that you wish to make a payment for, and then click on the 'Pay Super' button or click on the word 'Super Manager' and select 'Pay Super' from the pull-down menu.
and 
Before you are able to continue the Pay Advisor will remind you to print a current Superannuation Report. This screen also details the path and file name of the CSV file which contains that period's superannuation information for this particular super fund.

When you 'Click here to MAKE the Superannuation Payment' you will be able to enter your receipt number or cheque number the fund gives you when you make your remittance. Click OK

A message will appear confirming the total amount paid to super and you should also notice at this stage, the date has now changed automatically to the next month.

Once the payment has been acknowledged, the Pay Advisor will display a message showing the Fund totals. If you are attempting to pay the super before the end of the period (generally more than five days from the end of the month) you will get the following message:

You will notice that the period start date moves to the next period.
Once you have finished making a payment, click 'Back' to save your details and return to the main screen.
Once you pay the a fund for a particular period a comma separated file (.csv) file will be created in the parent data folder for that company. If your fund manager accepts the format you can e-mail it to them. For further information see Electronic File for Super Fund.